Award Abstract # 0727227
Connecting local, regional and global scales of gene flow in planktonic marine diatoms

NSF Org: OCE
Division Of Ocean Sciences
Recipient: UNIVERSITY OF RHODE ISLAND
Initial Amendment Date: July 16, 2007
Latest Amendment Date: July 16, 2007
Award Number: 0727227
Award Instrument: Standard Grant
Program Manager: David Garrison
OCE
 Division Of Ocean Sciences
GEO
 Directorate For Geosciences
Start Date: October 1, 2007
End Date: September 30, 2013 (Estimated)
Total Intended Award Amount: $852,094.00
Total Awarded Amount to Date: $852,094.00
Funds Obligated to Date: FY 2007 = $852,094.00
History of Investigator:
  • Tatiana Rynearson (Principal Investigator)
    rynearson@uri.edu
Recipient Sponsored Research Office: University of Rhode Island
75 LOWER COLLEGE RD RM 103
KINGSTON
RI  US  02881-1974
(401)874-2635
Sponsor Congressional District: 02
Primary Place of Performance: University of Rhode Island
75 LOWER COLLEGE RD RM 103
KINGSTON
RI  US  02881-1974
Primary Place of Performance
Congressional District:
02
Unique Entity Identifier (UEI): CJDNG9D14MW7
Parent UEI:
NSF Program(s): BIOLOGICAL OCEANOGRAPHY
Primary Program Source: 0100999999 NSF RESEARCH & RELATED ACTIVIT
Program Reference Code(s): 9117, 9150, 9169, EGCH
Program Element Code(s): 165000
Award Agency Code: 4900
Fund Agency Code: 4900
Assistance Listing Number(s): 47.050

ABSTRACT

Diatoms are ubiquitous, unicellular, eukaryotes that generate about 40% of the organic carbon fixed annually in the sea. Interpretation of diatom species distributions and abundances in relation to environmental conditions has relied on two assumptions: (1) cells with identical morphologies represent the same species and (2) high potentials for dispersal and gene flow in passively drifting diatoms prevent local adaptation. Recent studies have challenged both assumptions, suggesting diatoms possess rich patterns of genetic and physiological variation both within and between species. Although there is emerging evidence of intra-specific population differentiation on local scales (~100km), it is commonly assumed that planktonic microbes are homogenously distributed on global scales (e.g. Fenchel and Finlay 2004). There is currently no data on diatoms to support this assumption. Aside from intriguing data on local scales, nothing is known about regional and global-scale population genetics and biogeography of diatoms.

The research proposed here will focus on the essential questions of if and how populations of planktonic diatoms are connected at local, regional and global scales. Connectivity among populations can influence a species'' ecology, adaptive potential, evolutionary longevity and ultimately speciation potential. The proposed research will examine how local populations are connected to each other on regional scales and how regional dynamics connect to global-scale biogeographies using two model diatom species. rDNA sequence variation will be used to test whether broad species distributions observed in diatoms result from cryptic speciation. Within species, microsatellite markers will be used to identify genetically distinct populations, determine their relatedness to each other and examine spatial patterns of differentiation. The degree of physiological variation that accompanies genetic differentiation between populations will also be examined. Samples will be collected in a framework of existing oceanography and biodiversity programs, permitting genetic data to be interpreted in the context of larger, often long-term, studies. Because little is known about diatom biogeography, this work will begin to shed light on the connections between local and global population dynamics. Because the proposed research will represent the first large-scale sampling of diatom population genetics, it will also serve to generate many new hypotheses about the mechanisms that regulate ecological processes such as bloom formation over space and time and evolutionary processes such as the development of reproductive isolation and eventual speciation in planktonic organisms.

Broader impacts: The proposed research will contribute data that can be used by a new generation of numerical ocean ecosystem models that incorporate natural selection on basin-wide scales. Sampling will occur as part of existing programs such as long-term plankton monitoring, Census of Marine Life and existing oceanographic field programs. This project will tie these programs and their existing infrastructure together in new ways. Graduate and high school (HS) student education are integral components of the proposed research. The proposed research will fund one graduate student. Through a collaboration with the URI Office of Marine Programs (OMP), the proposed research will include the design of an interpretive program on biodiversity and genomics for HS students that will be delivered remotely with live, two-way, studio-to-classroom presentations coupled with video clips and Q&A sessions with students and teachers across the country via Internet2. The OMP will assist with reviews of educational content, provide field tests with teachers, and align the content to national science education standards. These critical steps will provide metrics for assessing the success of the outreach program.

PUBLICATIONS PRODUCED AS A RESULT OF THIS RESEARCH

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Rynearson, T.A., E.O. Lin and E.V. Armbrust "Metapopulation structure in the planktonic diatom Ditylum brightwellii (Bacillariophyceae)" Protist , v.160 , 2009 , p.111 10.1016/j.protis.2008.10.003
Alexander, H., Jenkins, B.D., Rynearson, T.A., Saito, M.A., Mercier, M.L. Dyhrman, S.T. "Identifying reference genes with stable expression from high throughput sequence data" Frontiers in Aquatic Microbiology , v.3 , 2012 , p.385 10.3389/fmicb.2012.00385
Boyd P.W., T.A. Rynearson, E.A., Armstrong, F-X. Fu, K. Hayashi, Z. Hu, D.A. Hutchins, R.M. Kudela, E. Litchman, M. R. Mulholland, U. Passow, R.F. Strzepek, *K.A. Whittaker, E. Yu and *M.K. Thomas "Marine Phytoplankton Temperature versus Growth Responses from Polar to Tropical Waters ? Outcome of a Scientific Community-Wide Study" PLoS ONE , v.8 , 2013 , p.e63091 10.1371/journal.pone.0063091
Collins, S, B. Rost, T. Rynearson "Evolutionary potential of marine phytoplankton under ocean acidification." Evolutionary Applications , v.7 , 2014 , p.140 10.1111/eva.12120
Piecuch, C and TA Rynearson "Quantifying dispersal and connectivity of surface waters using observational Lagrangian measurements" Journal of Atmospheric and Oceanic Technology , v.29 , 2012 , p.1127 10.1175/JTECH-D-11-00172.1
Rynearson, T. A., K Richardson, R. S. Lampitt, M. E. Sieracki, A. J. Poulton, M. M. Lyngsgaard, and M. J. Perry "Major contribution of diatom resting spores to vertical flux in the sub-polar North Atlantic." Deep Sea Res. I , v.82 , 2013 , p.60
Rynearson, T.A. and B. Palenik "Learning to read the oceans: Genomics of marine phytoplankton." Advances in Marine Biology , v.60 , 2011 , p.1
Rynearson, T.A., E.O. Lin and E.V. Armbrust "Metapopulation structure in the planktonic diatom Ditylum brightwellii (Bacillariophyceae)." Protist , v.160 , 2009 , p.111
Whittaker, KA, DR Rignanese, RJ Olson, TA Rynearson "Molecular subdivision of the marine diatom Thalassiosira rotula and its relationship to differences in geographic distribution, genome size, and physiology" BMC Evolutionary Biology , v.12 , 2012 , p.209 10.1186/1471-2148-12-209

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